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Fix some linting errors

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James A. Fellows Yates 2021-01-21 06:30:43 +01:00 committed by GitHub
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@ -1,5 +1,7 @@
# nf-core/configs: Center for Evolutionary Hologenomics & Section for Evolutionary Genomics (hologenomics partition on HPC) Configuration # nf-core/configs: Center for Evolutionary Hologenomics & Section for Evolutionary Genomics (hologenomics partition on HPC) Configuration
> **NB:** You will need an account to use the HPC cluster to run the pipeline. If in doubt contact IT.
The profile is configured to run with Singularity version 3.6.3-1.el7 which is part of the OS installtion and does not need to be loaded as a module. The profile is configured to run with Singularity version 3.6.3-1.el7 which is part of the OS installtion and does not need to be loaded as a module.
Before running the pipeline you will need to load Java, Miniconda and Nextflow. You can do this by including the commands below in your SLURM/sbatch script: Before running the pipeline you will need to load Java, Miniconda and Nextflow. You can do this by including the commands below in your SLURM/sbatch script:
@ -16,6 +18,4 @@ The config contains a `cleanup` command that removes the `work/` directory autom
This configuration will automatically choose the correct SLURM queue (short,medium,long) depending on the time and memory required by each process. This configuration will automatically choose the correct SLURM queue (short,medium,long) depending on the time and memory required by each process.
>NB: You will need an account to use the HPC cluster to run the pipeline. If in doubt contact IT. > **NB:** Nextflow will need to submit the jobs via SLURM to the HPC cluster and as such the commands above will have to be submitted from one of the login nodes.
>NB: Nextflow will need to submit the jobs via SLURM to the HPC cluster and as such the commands above will have to be submitted from one of the login nodes.