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fix: update and rearrange munin configuration file and docs

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MaxUlysse 2019-08-07 11:10:48 +02:00
parent da2a9047b0
commit 332ba0dadb
2 changed files with 15 additions and 11 deletions
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18
conf/munin.config
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@ -1,20 +1,22 @@
//Profile config names for nf-core/configs
params {
config_profile_description = 'Big iron cluster profile provided by nf-core/configs.'
config_profile_description = 'Munin profile provided by nf-core/configs.'
config_profile_contact = 'Szilveszter Juhos (@szilva)'
config_profile_url = ''
}
process {
executor = 'local'
maxForks = 48
}
// To use docker, use nextflow run -profile munin,singularity
singularity {
enabled = true
autoMounts = true
}
// To use docker instead of singularity, use nextflow run -profile munin,docker
// To use docker, use nextflow run -profile munin,docker
docker {
enabled = false
mountFlags = 'z'
@ -22,11 +24,11 @@ docker {
}
params {
saveReference = true
max_memory = 128.GB
max_cpus = 16
// general params
max_memory = 754.GB
max_cpus = 48
max_time = 72.h
// illumina iGenomes reference file paths on UPPMAX
igenomes_base = '/data1/references/igenomes/'
// AWS iGenomes reference file paths on munin
igenome_base = '/data1/references/igenomes/'
}

6
docs/munin.md
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@ -1,8 +1,10 @@
# nf-core/configs: MUNIN Configuration
All nf-core pipelines have been successfully configured for use on the MUNIN cluster aka big iron.
All nf-core pipelines have been successfully configured for use on the MUNIN cluster.
To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
To use, run the pipeline with `-profile munin`.
This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster.
Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
Example: `nextflow run -profile munin`