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docs(demultiplex): Add aws_tower docs

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Edmund Miller 2022-10-04 15:22:26 -05:00
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README.md
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@ -206,6 +206,8 @@ Currently documentation is available for the following pipelines within specific
- [SBC_SHARC](docs/pipeline/atacseq/sbc_sharc.md) - [SBC_SHARC](docs/pipeline/atacseq/sbc_sharc.md)
- chipseq - chipseq
- [SBC_SHARC](docs/pipeline/chipseq/sbc_sharc.md) - [SBC_SHARC](docs/pipeline/chipseq/sbc_sharc.md)
- demultiplex
- [AWS_TOWER](docs/pipeline/demultiplex/aws_tower.md)
- eager - eager
- [EVA](docs/pipeline/eager/eva.md) - [EVA](docs/pipeline/eager/eva.md)
- mag - mag

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docs/pipeline/demultiplex/aws_tower.md Normal file
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# nf-core/configs: AWS Tower Demultiplex specific configuration
Extra specific configuration for demultiplex pipeline
## Usage
To use, run the pipeline with `-profile aws_tower`.
This will download and launch the demultiplex specific [`aws_tower.config`](../../../conf/pipeline/demultiplex/aws_tower.config) which has been pre-configured with a setup suitable for AWS batch through tower.
Example: `nextflow run nf-core/demultiplex -profile aws_tower`
## eager specific configurations for eva
Specific configurations for AWS has been made for demultiplex.
### General profiles
- The general AWS Tower profile runs with default nf-core/demultiplex parameters, but with modifications to account file transfer speed and optimized bases2fastq resources.