diff --git a/conf/utd_ganymede.config b/conf/utd_ganymede.config index f701a3c..c64e673 100644 --- a/conf/utd_ganymede.config +++ b/conf/utd_ganymede.config @@ -20,6 +20,28 @@ process { beforeScript = 'module load singularity/3.2.1' executor = 'slurm' queue = { task.memory >= 32.GB && task.cpu <= 12 ? 'Kim': task.memory <= 24.GB && task.cpu <= 8 ? 'smallmem' : 'genomics' } + + withName:TRIMGALORE { + memory = 31.GB + } + + withLabel:process_low { + cpus = { check_max( 2 * task.attempt, 'cpus' ) } + memory = { check_max( 12.GB * task.attempt, 'memory' ) } + time = { check_max( 6.h * task.attempt, 'time' ) } + } + + withLabel:process_medium { + cpus = { check_max( 16 * task.attempt, 'cpus' ) } + memory = { check_max( 31.GB * task.attempt, 'memory' ) } + time = { check_max( 8.h * task.attempt, 'time' ) } + } + + withLabel:process_large { + cpus = { check_max( 12 * task.attempt, 'cpus' ) } + memory = { check_max( 1.GB * task.attempt, 'memory' ) } + time = { check_max( 16.h * task.attempt, 'time' ) } + } } params {