From 34ccce9531351fd8133c3dc3a77dab20398a5735 Mon Sep 17 00:00:00 2001
From: Edmund Miller <edmund.a.miller@protonmail.com>
Date: Sun, 21 Mar 2021 21:46:25 -0500
Subject: [PATCH] fix(ganymede): Add process resources

Trimgalore though it can be a bottom neck, doesn't require the 1 big
memory node we have and can be run on the genomics queue.
---
 conf/utd_ganymede.config | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/conf/utd_ganymede.config b/conf/utd_ganymede.config
index f701a3c..c64e673 100644
--- a/conf/utd_ganymede.config
+++ b/conf/utd_ganymede.config
@@ -20,6 +20,28 @@ process {
   beforeScript = 'module load singularity/3.2.1'
   executor = 'slurm'
   queue = { task.memory >= 32.GB && task.cpu <= 12 ? 'Kim': task.memory <= 24.GB && task.cpu <= 8 ? 'smallmem' : 'genomics' }
+
+  withName:TRIMGALORE {
+    memory = 31.GB
+  }
+
+  withLabel:process_low {
+    cpus = { check_max( 2 * task.attempt, 'cpus' ) }
+    memory = { check_max( 12.GB * task.attempt, 'memory' ) }
+    time = { check_max( 6.h * task.attempt, 'time' ) }
+  }
+
+  withLabel:process_medium {
+    cpus = { check_max( 16 * task.attempt, 'cpus' ) }
+    memory = { check_max( 31.GB * task.attempt, 'memory' ) }
+    time = { check_max( 8.h * task.attempt, 'time' ) }
+  }
+
+  withLabel:process_large {
+    cpus = { check_max( 12 * task.attempt, 'cpus' ) }
+    memory = { check_max( 1.GB * task.attempt, 'memory' ) }
+    time = { check_max( 16.h * task.attempt, 'time' ) }
+  }
 }
 
 params {