From 366f945a401def16bafb2a1e0d0713824f23fe4a Mon Sep 17 00:00:00 2001
From: Marc Trunjer Kusk Nielsen <marc.mtk@gmail.com>
Date: Mon, 13 Sep 2021 14:20:55 +0200
Subject: [PATCH] Update computerome.config

---
 conf/computerome.config | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/conf/computerome.config b/conf/computerome.config
index e4f41e8..aaa8d5b 100644
--- a/conf/computerome.config
+++ b/conf/computerome.config
@@ -5,7 +5,7 @@ params {
   config_profile_url = 'https://www.computerome.dk/'
   project = null
   schema_ignore_params = "project"
-  singularity_cache_dir = { "/home/projects/$params.project/scratch" }
+  cache = { "/home/projects/$params.project/scratch" }
   
   //Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this
   max_memory = 1500.GB 
@@ -18,11 +18,11 @@ params {
 singularity {
   enabled = true
   autoMounts = true
-  cacheDir = params.singularity_cache_dir
+  cacheDir = params.cache
 }
 
 process {
-  beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=/home/projects/$params.project/scratch" }
+  beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache; export NXF_SINGULARITY_CACHEDIR=$params.cache" }
   executor = 'pbs'
   queueSize = 2000
   clusterOptions = { "-A $params.project -W group_list=$params.project" }