diff --git a/conf/czbiohub.config b/conf/czbiohub_aws.config similarity index 95% rename from conf/czbiohub.config rename to conf/czbiohub_aws.config index d51c6f2..baf4550 100644 --- a/conf/czbiohub.config +++ b/conf/czbiohub_aws.config @@ -20,8 +20,15 @@ docker { process { executor = 'awsbatch' + queue = 'nextflow' } +workDir = "s3://czb-nextflow/work" + +aws.region = 'us-west-2' +executor.awscli = '/home/ec2-user/miniconda/bin/aws' +params.tracedir = './' + params { saveReference = true @@ -42,7 +49,6 @@ params { // AWS configurations awsregion = "us-west-2" awsqueue = "nextflow" - workDir = "s3://czb-nextflow/rnaseq/" // GENCODE GTF and fasta files genomes {