diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index c906cf9..0742e5c 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -23,9 +23,8 @@ jobs: run: | wget -qO- get.nextflow.io | bash sudo mv nextflow /usr/local/bin/ - touch /home/runner/dummy.config - name: Check ${{ matrix.profile }} profile env: SCRATCH: '~' - NXF_GLOBAL_CONFIG: /home/runner/dummy.config + NXF_GLOBAL_CONFIG: ${GITHUB_WORKSPACE}/config/awsbatch.config run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}