From 3f534c154ea30152983865d10e6d8d13f68c8cf8 Mon Sep 17 00:00:00 2001 From: arontommi Date: Wed, 6 Nov 2019 13:10:09 +0100 Subject: [PATCH] documentation on how to fix bianca cluster configuration problem --- docs/uppmax.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/docs/uppmax.md b/docs/uppmax.md index 07a7f14..d5bba37 100644 --- a/docs/uppmax.md +++ b/docs/uppmax.md @@ -26,6 +26,12 @@ If running on Bianca, you will have no internet connection and these configs wil Please use the nf-core helper tool on a different system to download the required pipeline files, and transfer them to bianca. This helper tool bundles the config files in this repo together with the pipeline files, so the profile will still be available. +Please note that Bianca only allocates 7 GB memory per core so max memory needs to be configured: + +```bash +--max_memory "112GB" +``` + ## Getting more memory If your nf-core pipeline run is running out of memory, you can run on a fat node with more memory using the following nextflow flags: