millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-12-22 10:38:16 +00:00
Code Issues Releases Packages Activity

Create ebc.md

Browse source
This commit is contained in:
marcel-keller 2020-03-09 16:23:16 +02:00 committed by GitHub
parent de914e56ee
commit 418f4b52b6
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 8 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
docs/ebc.md Normal file
View file

@ -0,0 +1,8 @@
# nf-core/configs: EBC Configuration
All nf-core pipelines have been successfully configured for use on the [Estonian Biocentre (EBC)](https://genomics.ut.ee/en/about-us/estonian-biocentre) cluster at the [High Performance Computing Center](https://hpc.ut.ee/en) of the the University of Tartu.
To use, run the pipeline with `-profile ebc`. This will download and launch the [`ebc.config`](../conf/ebc.config) which has been pre-configured with a setup suitable for the EBC cluster. Using this profile, currently, a conda environment containing all of the required software will be downloaded and stored in a central location.
The profile will put a maximum job limit of 12 GB, 20 CPUs and a maximum wall time of 120 hours.
NB: You will need an account to use the HPC cluster on EBC cluster in order to run the pipeline. If in doubt contact IT.
NB: Nextflow will need to submit the jobs via the SLURM scheduler to the HPC cluster and as such the commands above will have to be executed on one of the head nodes. If in doubt contact IT.