correct md to pass linter

docs/genotoul.md

@@ -10,37 +10,41 @@ Using this profile, a docker image containing all of the required software
 will be downloaded, and converted to a Singularity image before execution
 of the pipeline. Images are stored for all users in following directory `/usr/local/bioinfo/src/NextflowWorkflows/singularity-img/`.
 
-## Running the workflow ib the Genologin cluster.
+## Running the workflow ib the Genologin cluster
 
 Before running the pipeline you will need to load Nextflow and
 Singularity using the environment module system on Genotoul. You can do
 this by issuing the commands below:
 
-
 Once connected on our frontal node :
-```
+
+```bash
 # Login to a compute node
 srun --mem=4G --pty bash
 ```
 
 Setup default nextflow and singularity home directory (to be done only one time):
-```
+
+```bash
 sh /usr/local/bioinfo/src/NextflowWorkflows/create_nfx_dirs.sh
 ```
 
 Load environment :
-```
+
+```bash
 module purge
 module load bioinfo/nfcore-Nextflow-v19.04.0
 ```
 
 Try a test workflow (for example the methylseq workflow) :
-```
+
+```bash
 nextflow run nf-core/methylseq -profile genotoul,test
 ```
 
 Create launch script `nfcore-rnaseq.sh` :
-```
+
+```bash
 #!/bin/bash
 #SBATCH -p workq
 #SBATCH -t 1:00:00  #time in hour
@@ -51,7 +55,8 @@ module load bioinfo/nfcore-Nextflow-v19.04.0
 nextflow run nf-core/methylseq -profile genotoul,test
 ```
 Launch on the cluster with sbatch:
-```
+
+```bash
 sbatch nfcore-rnaseq.sh
 ```
 
@@ -64,10 +69,9 @@ By default, available mount points are :
  - /work  
  - /work2  
 
-
 To have access to specific other mount point (such as nosave or project)
 you can add a config profile file with option `-profile` and wich contain:
-```
+```bash
 singularity.runOptions = '-B /diretory/to/mount'
 ```
 
@@ -77,6 +81,5 @@ A local copy of several genomes are available in `/bank` directory. See
 our [databank page](http://bioinfo.genotoul.fr/index.php/resources-2/databanks/)
 to search for your favorite genome.
 
-
 >NB: You will need an account to use the HPC cluster on Genotoul in order
-to run the pipeline. If in doubt see http://bioinfo.genotoul.fr/.
+to run the pipeline. If in doubt see [http://bioinfo.genotoul.fr/](http://bioinfo.genotoul.fr/).