From 5bc6ed90bde50cf0443e9cfadc626546b6731cff Mon Sep 17 00:00:00 2001
From: sofstam <sofia.stamouli@scilifelab.se>
Date: Wed, 11 May 2022 11:13:31 +0200
Subject: [PATCH 1/4] Add hasta config for taxprofiler

---
 conf/pipeline/taxprofiler/hasta.config | 10 ++++++++++
 pipeline/taxprofiler.config            | 13 +++++++++++++
 2 files changed, 23 insertions(+)
 create mode 100644 conf/pipeline/taxprofiler/hasta.config
 create mode 100644 pipeline/taxprofiler.config

diff --git a/conf/pipeline/taxprofiler/hasta.config b/conf/pipeline/taxprofiler/hasta.config
new file mode 100644
index 0000000..fcf7b7d
--- /dev/null
+++ b/conf/pipeline/taxprofiler/hasta.config
@@ -0,0 +1,10 @@
+process {
+
+    withName:'BBMAP_BBDUK' {
+        memory = { check_max( 80.GB   * task.attempt, 'memory' ) }
+    }
+
+    withName: 'MALT_RUN' {
+        memory = { check_max( 80.GB   * task.attempt, 'memory' ) }
+    }
+}
diff --git a/pipeline/taxprofiler.config b/pipeline/taxprofiler.config
new file mode 100644
index 0000000..be9f02b
--- /dev/null
+++ b/pipeline/taxprofiler.config
@@ -0,0 +1,13 @@
+/*
+ * -------------------------------------------------
+ *  nfcore/taxprofiler custom profile Nextflow config file
+ * -------------------------------------------------
+ * Config options for custom environments.
+ * Cluster-specific config options should be saved
+ * in the conf/pipeline/taxprofiler folder and imported
+ * under a profile name here.
+ */
+
+profiles {
+  hasta { includeConfig "${params.custom_config_base}/conf/pipeline/taxprofiler/hasta.config" }
+}

From 54b3cda34d9042ee5b5698d9101e38058e1266c5 Mon Sep 17 00:00:00 2001
From: sofstam <sofia.stamouli@scilifelab.se>
Date: Thu, 12 May 2022 11:00:26 +0200
Subject: [PATCH 2/4] Add review suggestion

---
 conf/pipeline/taxprofiler/hasta.config | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/conf/pipeline/taxprofiler/hasta.config b/conf/pipeline/taxprofiler/hasta.config
index fcf7b7d..1241558 100644
--- a/conf/pipeline/taxprofiler/hasta.config
+++ b/conf/pipeline/taxprofiler/hasta.config
@@ -1,3 +1,9 @@
+params {
+  // Specific nf-core/configs params
+  config_profile_contact = 'Sofia Stamouli (@sofstam)'
+  config_profile_description = 'nf-core/taxprofiler HASTA profile provided by nf-core/configs'
+}
+
 process {
 
     withName:'BBMAP_BBDUK' {

From b1deb0abce3bd642387ec3e87e7860877344e121 Mon Sep 17 00:00:00 2001
From: sofstam <sofia.stamouli@scilifelab.se>
Date: Thu, 12 May 2022 14:56:52 +0200
Subject: [PATCH 3/4] Update README.md

---
 README.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/README.md b/README.md
index 43b8c71..8acc0d5 100644
--- a/README.md
+++ b/README.md
@@ -201,6 +201,7 @@ Currently documentation is available for the following pipelines within specific
   - [UPPMAX](docs/pipeline/sarek/uppmax.md)
 - taxprofiler
   - [EVA](docs/pipeline/taxprofiler/eva.md)
+  - [hasta](docs/pipeline/taxprofiler/hasta.md)
 
 ### Pipeline-specific documentation
 

From ca4cdcffeed7fa34d5ce635e707c98979aeb57e7 Mon Sep 17 00:00:00 2001
From: sofstam <sofia.stamouli@scilifelab.se>
Date: Thu, 12 May 2022 15:07:30 +0200
Subject: [PATCH 4/4] Fix typo

---
 docs/pipeline/{ => taxprofiler}/hasta.md | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename docs/pipeline/{ => taxprofiler}/hasta.md (100%)

diff --git a/docs/pipeline/hasta.md b/docs/pipeline/taxprofiler/hasta.md
similarity index 100%
rename from docs/pipeline/hasta.md
rename to docs/pipeline/taxprofiler/hasta.md