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add note about upcoming upstream fix

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also refactor the closure to make it slightly more readable
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phue 2021-06-17 11:12:36 +02:00
parent f5c36dde3e
commit 45213cf6db
1 changed files with 3 additions and 1 deletions
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conf/cbe.config
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@ -8,8 +8,10 @@ params {
process { process {
executor = 'slurm' executor = 'slurm'
queue = { task.memory <= 170.GB ? 'c' : 'm' } queue = { task.memory <= 170.GB ? 'c' : 'm' }
clusterOptions = { def qos = task.time <= 1.h ? '--qos rapid' : { task.time <= 8.h ? '--qos short': { task.time <= 48.h ? '--qos medium' : '--qos long' } }; qos << ' --signal B:USR2' }
module = 'anaconda3/2019.10' module = 'anaconda3/2019.10'
// --signal option will be handled by nextflow after 21.10.0 release (see https://github.com/nextflow-io/nextflow/issues/2163)
clusterOptions = { '--signal B:USR2 ' << ( task.time <= 1.h ? '--qos rapid' : ( task.time <= 8.h ? '--qos short': ( task.time <= 48.h ? '--qos medium' : '--qos long' ) ) ) }
} }
singularity { singularity {