millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 08:29:54 +00:00
Code Issues Releases Packages Activity

Merge pull request #314 from jfy133/master

Browse source 
Update eager@eva to add java buffer for bbduk
This commit is contained in:
James A. Fellows Yates 2022-01-14 07:40:56 +01:00 committed by GitHub
commit 4546e0f389
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 12 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

12
conf/pipeline/eager/eva.config
View file

@ -101,6 +101,10 @@ process {
memory = { check_max( 4.GB * task.attempt, 'memory' ) } memory = { check_max( 4.GB * task.attempt, 'memory' ) }
} }
withName: metagenomic_complexity_filter {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
}
withName: malt { withName: malt {
clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
cpus = { check_max( 32, 'cpus' ) } cpus = { check_max( 32, 'cpus' ) }
@ -258,6 +262,10 @@ profiles {
memory = { check_max( 4.GB * task.attempt, 'memory' ) } memory = { check_max( 4.GB * task.attempt, 'memory' ) }
} }
withName: metagenomic_complexity_filter {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
}
withName: malt { withName: malt {
clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
cpus = { check_max( 32, 'cpus' ) } cpus = { check_max( 32, 'cpus' ) }
@ -425,6 +433,10 @@ profiles {
time = 1440.h time = 1440.h
} }
withName: metagenomic_complexity_filter {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
}
withName: malt { withName: malt {
clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
cpus = { check_max( 32, 'cpus' ) } cpus = { check_max( 32, 'cpus' ) }