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Merge pull request #314 from jfy133/master
Update eager@eva to add java buffer for bbduk
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commit
4546e0f389
1 changed files with 12 additions and 0 deletions
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@ -101,6 +101,10 @@ process {
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memory = { check_max( 4.GB * task.attempt, 'memory' ) }
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}
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withName: metagenomic_complexity_filter {
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clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
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}
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withName: malt {
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clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
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cpus = { check_max( 32, 'cpus' ) }
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@ -258,6 +262,10 @@ profiles {
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memory = { check_max( 4.GB * task.attempt, 'memory' ) }
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}
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withName: metagenomic_complexity_filter {
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clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
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}
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withName: malt {
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clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
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cpus = { check_max( 32, 'cpus' ) }
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@ -425,6 +433,10 @@ profiles {
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time = 1440.h
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}
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withName: metagenomic_complexity_filter {
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clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
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}
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withName: malt {
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clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
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cpus = { check_max( 32, 'cpus' ) }
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