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This commit is contained in:
Adrian Larkeryd 2020-03-05 10:39:19 +00:00
parent ead67d1e90
commit 46223a3dbb
1 changed files with 3 additions and 13 deletions
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conf/icr_davros.config
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@ -1,11 +1,4 @@
/*
* -------------------------------------------------
* Nextflow nf-core config file for ICR davros HPC
* -------------------------------------------------
* Defines LSF process executor and singularity
* settings.
*
*/
params { params {
config_profile_description = "Nextflow nf-core profile for ICR davros HPC" config_profile_description = "Nextflow nf-core profile for ICR davros HPC"
config_profile_contact = "Adrian Larkeryd" config_profile_contact = "Adrian Larkeryd"
@ -17,9 +10,7 @@ singularity {
} }
executor { executor {
# This is set because of an issue with too many
# singularity containers launching at once, they
# cause an singularity error with exit code 255.
submitRateLimit = "2 sec" submitRateLimit = "2 sec"
} }
@ -28,8 +19,7 @@ process {
} }
params { params {
# LSF cluster set up with memory tied to cores,
# it can't be requested. Locked at 12G per core.
cpus = 10 cpus = 10
max_cpus = 20 max_cpus = 20
max_memory = 12.GB max_memory = 12.GB