diff --git a/conf/pipeline/eager/eva.config b/conf/pipeline/eager/eva.config index 0e48e69..e6ef407 100644 --- a/conf/pipeline/eager/eva.config +++ b/conf/pipeline/eager/eva.config @@ -74,6 +74,22 @@ process { clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G" } errorStrategy = { task.exitStatus in [1,143,137,104,134,139,140] ? 'retry' : 'finish' } } + + withName: bwa { + clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory} h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } + } + + withName: bwamem { + clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory} h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } + } + + withName: circularmapper { + clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory} h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } + } + + withName: bowtie2 { + clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory} h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" } + } withName: samtools_flagstat { clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G" }