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Merge pull request #231 from maxulysse/master_kraken

Remove kraken profile
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Maxime U. Garcia 2021-07-20 09:29:47 +02:00 committed by GitHub
commit 47217cae5b
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5 changed files with 0 additions and 37 deletions

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@ -44,7 +44,6 @@ jobs:
- 'imperial'
- 'imperial_mb'
- 'jax'
- 'kraken'
- 'mpcdf'
- 'munin'
- 'oist'

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@ -118,7 +118,6 @@ Currently documentation is available for the following systems:
* [HEBBE](docs/hebbe.md)
* [ICR_DAVROS](docs/icr_davros.md)
* [JAX](docs/jax.md)
* [KRAKEN](docs/kraken.md)
* [MPCDF](docs/mpcdf.md)
* [MUNIN](docs/munin.md)
* [OIST](docs/oist.md)

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@ -1,24 +0,0 @@
//Profile config names for nf-core/configs
params {
config_profile_name = 'KRAKEN'
config_profile_description = 'Jenkins cluster provided by nf-core/configs.'
config_profile_contact = 'Maxime Garcia or Johannes Alneberg'
config_profile_url = 'kraken.dyn.scilifelab.se'
}
process {
executor = 'local'
}
docker {
enabled = true
mountFlags = 'z'
fixOwnership = true
}
params {
max_memory = 60.GB
max_cpus = 16
max_time = 72.h
igenomes_base = '/share/igenomes/'
}

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@ -1,10 +0,0 @@
# nf-core/configs: KRAKEN Configuration
This profile can be **only** combined with `jenkins.config`. It is used for
testing pipeline with real data on **in-house** cluster located at SciLifeLab.
To use, run the pipeline with `-profile kraken`. This will download and launch
the [`kraken.config`](../conf/kraken.config) which has been pre-configured to
test the pipeline using `docker` by default.
Example: `nextflow run -profile kraken,jenkins`

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@ -37,7 +37,6 @@ profiles {
genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" }
gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
kraken { includeConfig "${params.custom_config_base}/conf/kraken.config" }
mpcdf { includeConfig "${params.custom_config_base}/conf/mpcdf.config" }
munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
oist { includeConfig "${params.custom_config_base}/conf/oist.config" }