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Merge pull request #231 from maxulysse/master_kraken
Remove kraken profile
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commit
47217cae5b
5 changed files with 0 additions and 37 deletions
1
.github/workflows/main.yml
vendored
1
.github/workflows/main.yml
vendored
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@ -44,7 +44,6 @@ jobs:
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- 'imperial'
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- 'imperial_mb'
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- 'jax'
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- 'kraken'
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- 'mpcdf'
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- 'munin'
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- 'oist'
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@ -118,7 +118,6 @@ Currently documentation is available for the following systems:
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* [HEBBE](docs/hebbe.md)
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* [ICR_DAVROS](docs/icr_davros.md)
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* [JAX](docs/jax.md)
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* [KRAKEN](docs/kraken.md)
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* [MPCDF](docs/mpcdf.md)
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* [MUNIN](docs/munin.md)
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* [OIST](docs/oist.md)
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@ -1,24 +0,0 @@
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//Profile config names for nf-core/configs
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params {
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config_profile_name = 'KRAKEN'
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config_profile_description = 'Jenkins cluster provided by nf-core/configs.'
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config_profile_contact = 'Maxime Garcia or Johannes Alneberg'
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config_profile_url = 'kraken.dyn.scilifelab.se'
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}
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process {
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executor = 'local'
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}
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docker {
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enabled = true
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mountFlags = 'z'
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fixOwnership = true
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}
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params {
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max_memory = 60.GB
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max_cpus = 16
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max_time = 72.h
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igenomes_base = '/share/igenomes/'
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}
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@ -1,10 +0,0 @@
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# nf-core/configs: KRAKEN Configuration
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This profile can be **only** combined with `jenkins.config`. It is used for
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testing pipeline with real data on **in-house** cluster located at SciLifeLab.
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To use, run the pipeline with `-profile kraken`. This will download and launch
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the [`kraken.config`](../conf/kraken.config) which has been pre-configured to
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test the pipeline using `docker` by default.
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Example: `nextflow run -profile kraken,jenkins`
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@ -37,7 +37,6 @@ profiles {
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genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" }
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gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
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hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
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kraken { includeConfig "${params.custom_config_base}/conf/kraken.config" }
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mpcdf { includeConfig "${params.custom_config_base}/conf/mpcdf.config" }
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munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
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oist { includeConfig "${params.custom_config_base}/conf/oist.config" }
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