1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-10 20:13:09 +00:00

Update SHH nf-core/eager pipeline docs

This commit is contained in:
James A. Fellows Yates 2020-05-04 21:04:17 +02:00 committed by GitHub
parent d42d7f4146
commit 4804052b23
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23

View file

@ -15,3 +15,4 @@ Example: `nextflow run nf-core/eager -profile shh`
Specific configurations for shh has been made for eager.
* If running with the MALT module turned on, the MALT process by default will be sent to the long queue with a resource requirement minimum of 725GB and 64 cores. If this fails, the process will be tried once more only and sent to the supercruncher queue. The module will not retry after this, and pipeline will fail.
* Modifies the bwa aln `-n` parameter to 0.01, rather than typical default of 0.03, to syncronise the (unpublished) parameter with EAGER1 and typical/expected usage within the department.