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cbe: add gpu support

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just in case.. note that this will need --nv in containerOptions in order to mount cuda libs into the container
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phue 2022-02-04 10:31:58 +01:00
parent a6dd3aa0f1
commit 49810a69b3
1 changed files with 1 additions and 3 deletions
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conf/cbe.config
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@ -9,9 +9,7 @@ process {
executor = 'slurm' executor = 'slurm'
queue = { task.memory <= 170.GB ? 'c' : 'm' } queue = { task.memory <= 170.GB ? 'c' : 'm' }
module = ['build-env/.f2021', 'build-env/f2021', 'anaconda3/2021.11'] module = ['build-env/.f2021', 'build-env/f2021', 'anaconda3/2021.11']
clusterOptions = { ( task.queue == 'g' ? '--gres gpu:1 ' : '' ) << ( (task.queue == 'c' & task.time <= 1.h) ? '--qos rapid' : ( task.time <= 8.h ? '--qos short': ( task.time <= 48.h ? '--qos medium' : '--qos long' ) ) ) }
// --signal option will be handled by nextflow after 21.10.0 release (see https://github.com/nextflow-io/nextflow/issues/2163)
clusterOptions = { '--signal B:USR2 ' << ( (queue == 'c' & task.time <= 1.h) ? '--qos rapid' : ( task.time <= 8.h ? '--qos short': ( task.time <= 48.h ? '--qos medium' : '--qos long' ) ) ) }
} }
singularity { singularity {