From 4ceb369af53ec89bce5dc4852ee28a366c2501d7 Mon Sep 17 00:00:00 2001
From: ameynert <alison.meynert@igmm.ed.ac.uk>
Date: Wed, 21 Jul 2021 12:10:43 +0100
Subject: [PATCH] eddie.config for viralrecon pipeline

---
 conf/pipeline/viralrecon/eddie.config | 9 +++++++++
 1 file changed, 9 insertions(+)
 create mode 100644 conf/pipeline/viralrecon/eddie.config

diff --git a/conf/pipeline/viralrecon/eddie.config b/conf/pipeline/viralrecon/eddie.config
new file mode 100644
index 0000000..38192ef
--- /dev/null
+++ b/conf/pipeline/viralrecon/eddie.config
@@ -0,0 +1,9 @@
+process {
+  withName : '.*PICARD.*' {
+    clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
+  }
+
+  withName : '.*SNPEFF.*' {
+    clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
+  }
+}