From 4eea06f0dbeb9189496ef6881bffc95bc8b19935 Mon Sep 17 00:00:00 2001 From: Maxime Garcia Date: Tue, 20 Apr 2021 16:03:34 +0200 Subject: [PATCH] Apply suggestions from code review Co-authored-by: Pontus Freyhult --- docs/uppmax.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/uppmax.md b/docs/uppmax.md index c17063c..621448b 100644 --- a/docs/uppmax.md +++ b/docs/uppmax.md @@ -8,7 +8,7 @@ We have a Slack channel dedicated to UPPMAX users on the nf-core Slack: [https:/ ## Using the UPPMAX config profile -Before running the pipeline you will need to either install Nextflow or load it using the environment module system. +Before running the pipeline you will need to either install Nextflow or load it using the environment module system (this can be done with e.g. `module load bioinfo-tools Nextflow/` where `VERSION` is e.g. `20.10`). To use, run the pipeline with `-profile uppmax` (one hyphen). This will download and launch the [`uppmax.config`](../conf/uppmax.config) which has been pre-configured with a setup suitable for the UPPMAX servers.