From 4f98876429cb5ba81ed7f4564670a90d0e4d40b7 Mon Sep 17 00:00:00 2001 From: qlr900 Date: Wed, 6 Jul 2022 13:35:10 +0200 Subject: [PATCH] add export to NXF_SINGULARITY_CACHEDIR --- docs/ku_sund_dangpu.md | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/docs/ku_sund_dangpu.md b/docs/ku_sund_dangpu.md index 5515b87..96bff9f 100644 --- a/docs/ku_sund_dangpu.md +++ b/docs/ku_sund_dangpu.md @@ -1,4 +1,4 @@ -# nf-core/configs: PROFILE Configuration +# nf-core/configs: ku_sund_dangpu configuration All nf-core pipelines have been successfully configured for use on the DANGPU at the Novo Nordisk Foundation Center for Stem Cell Medicine (reNEW) and the Novo Nordisk Foundation Center for Protein Research (CPR) at the University of Copenhagen. @@ -13,11 +13,12 @@ Before running the pipeline you will need to load Nextflow and Singularity using ## Load Nextflow and Singularity environment modules module purge module load openjdk/11.0.0 nextflow/22.04.3 singularity/3.8.0 -# alternative module load jdk/1.8.0_291 nextflow/21.04.1.5556 singularity/3.8.0 +# alternative +# module load jdk/1.8.0_291 nextflow/21.04.1.5556 singularity/3.8.0 export NXF_OPTS='-Xms1g -Xmx4g' export NXF_HOME=/projects/dan1/people/${USER}/cache/nxf-home export NXF_TEMP=/scratch/tmp -NXF_SINGULARITY_CACHEDIR=/projects/dan1/people/${USER}/cache/singularity-images +export NXF_SINGULARITY_CACHEDIR=/projects/dan1/people/${USER}/cache/singularity-images ``` create nextflow directories if they dont exist: