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@ -6,20 +6,20 @@ A repository for hosting Nextflow configuration files containing custom paramete
## Table of contents <!-- omit in toc --> ## Table of contents <!-- omit in toc -->
- [Using an existing config](#using-an-existing-config) * [Using an existing config](#using-an-existing-config)
- [Configuration and parameters](#configuration-and-parameters) * [Configuration and parameters](#configuration-and-parameters)
- [Offline usage](#offline-usage) * [Offline usage](#offline-usage)
- [Adding a new config](#adding-a-new-config) * [Adding a new config](#adding-a-new-config)
- [Checking user hostnames](#checking-user-hostnames) * [Checking user hostnames](#checking-user-hostnames)
- [Testing](#testing) * [Testing](#testing)
- [Documentation](#documentation) * [Documentation](#documentation)
- [Uploading to `nf-core/configs`](#uploading-to-nf-coreconfigs) * [Uploading to `nf-core/configs`](#uploading-to-nf-coreconfigs)
- [Adding a new pipeline-specific config](#adding-a-new-pipeline-specific-config) * [Adding a new pipeline-specific config](#adding-a-new-pipeline-specific-config)
- [Pipeline-specific institutional documentation](#pipeline-specific-institutional-documentation) * [Pipeline-specific institutional documentation](#pipeline-specific-institutional-documentation)
- [Pipeline-specific documentation](#pipeline-specific-documentation) * [Pipeline-specific documentation](#pipeline-specific-documentation)
- [Enabling pipeline-specific configs within a pipeline](#enabling-pipeline-specific-configs-within-a-pipeline) * [Enabling pipeline-specific configs within a pipeline](#enabling-pipeline-specific-configs-within-a-pipeline)
- [Create the pipeline-specific `nf-core/configs` files](#create-the-pipeline-specific-nf-coreconfigs-files) * [Create the pipeline-specific `nf-core/configs` files](#create-the-pipeline-specific-nf-coreconfigs-files)
- [Help](#help) * [Help](#help)
## Using an existing config ## Using an existing config