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added nyu prince and bigpurple configs

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This commit is contained in:
Tobias Schraink 2019-04-17 16:59:38 -04:00
parent 37ae0fa3a6
commit 51c2a54399
3 changed files with 46 additions and 0 deletions
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23
conf/bigpurple.config Normal file
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@ -0,0 +1,23 @@
params {
config_profile_description = """
NYU School of Medicine BigPurple cluster profile provided by nf-core/configs.
module load both singularity/3.1 and squashfs-tools/4.3 before running the pipeline with this profile!
Also consider running the pipeline on a compute node the first time, as it will be pulling the docker image, which will be converted into a singularity image, which is heavy on the login node. Subsequent runs can be done on the login node, as the docker image will only be pulled and converted once. By default the images will be stored in ./work/singularity
""".stripIndents()
config_profile_contact = 'Tobias Schraink (@tobsecret)'
config_profile_url = 'https://genome.med.nyu.edu/hpcf/wiki/Manual:Cluster_User_Guide'
}
singularity {
enabled = true
autoMounts = true
}
process {
beforeScript = """
module load singularity/3.1
module load squashfs-tools/4.3
"""
.stripIndent()
executor = 'slurm'
}

21
conf/prince.config Normal file
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@ -0,0 +1,21 @@
params {
config_profile_description = """
NYU prince cluster profile provided by nf-core/configs.
Please consider running the pipeline on a compute node the first time, as it will be pulling the docker image, which will be converted into a singularity image, which is heavy on the login node. Subsequent runs can be done on the login node, as the docker image will only be pulled and converted once. By default the images will be stored in ./work/singularity
""".stripIndent()
config_profile_contact = 'Tobias Schraink (@tobsecret)'
config_profile_url = 'https://wikis.nyu.edu/display/NYUHPC/Clusters+-+Prince'
}
singularity {
enabled = true
}
process {
beforeScript = """
module load singularity/3.1.0
module load squashfs/4.3
"""
.stripIndent()
executor = 'slurm'
}

2
nfcore_custom.config
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@ -26,6 +26,8 @@ profiles {
uppmax_devel { includeConfig "${params.custom_config_base}/conf/uppmax.config"; includeConfig "${params.custom_config_base}/conf/uppmax-devel.config" }
uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
}
// If user hostnames contain one of these substring and they are