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Add AaegL5.0 config
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@ -50,6 +50,7 @@ params {
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// No final slash because it's added later
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gencode_base = "s3://czbiohub-reference/gencode"
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transgenes_base = "s3://czbiohub-reference/transgenes"
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refseq_base = "s3://czbiohub-reference/ncbi/genomes/refseq/"
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// AWS configurations
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awsregion = "us-west-2"
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@ -79,6 +80,12 @@ params {
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transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa"
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star = "${params.gencode_base}/mouse/vM21/STARIndex/"
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}
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'AaegL5.0' {
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fasta = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.fna"
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gtf = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.gtf"
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bed = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.bed"
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star = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/star/"
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}
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}
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transgenes {
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