millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-13 05:03:10 +00:00
Code Issues Releases Packages Activity

Add AaegL5.0 config

Browse source
This commit is contained in:
Olga Botvinnik 2020-03-17 16:45:20 -07:00 committed by GitHub
parent 8b1835484e
commit 52369ba6ad
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 7 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
conf/czbiohub_aws.config
View file

@ -50,6 +50,7 @@ params {
// No final slash because it's added later
gencode_base = "s3://czbiohub-reference/gencode"
transgenes_base = "s3://czbiohub-reference/transgenes"
refseq_base = "s3://czbiohub-reference/ncbi/genomes/refseq/"
// AWS configurations
awsregion = "us-west-2"
@ -79,6 +80,12 @@ params {
transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa"
star = "${params.gencode_base}/mouse/vM21/STARIndex/"
}
'AaegL5.0' {
fasta = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.fna"
gtf = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.gtf"
bed = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.bed"
star = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/star/"
}
}
transgenes {