From 53d56310bb064c4b9a2ccf7c869b5df6bd21261c Mon Sep 17 00:00:00 2001
From: drpatelh <drhpatel@gmail.com>
Date: Wed, 6 Mar 2019 18:14:45 +0000
Subject: [PATCH] Added conf folder to paths

---
 nfcore_custom.config | 30 +++++++++++++++---------------
 1 file changed, 15 insertions(+), 15 deletions(-)

diff --git a/nfcore_custom.config b/nfcore_custom.config
index 86532cd..dfcb4d2 100644
--- a/nfcore_custom.config
+++ b/nfcore_custom.config
@@ -12,20 +12,20 @@ params.custom_config_version = 'master'
 params.custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
 
 profiles {
-  binac        { includeConfig "${params.custom_config_base}/binac.config" }
-  ccga         { includeConfig "${params.custom_config_base}/ccga.config" }
-  cfc          { includeConfig "${params.custom_config_base}/cfc.config" }
-  crick        { includeConfig "${params.custom_config_base}/crick.config" }
-  gis          { includeConfig "${params.custom_config_base}/gis.config" }
-  hebbe        { includeConfig "${params.custom_config_base}/hebbe.config" }
-  mendel       { includeConfig "${params.custom_config_base}/mendel.config" }
-  munin        { includeConfig "${params.custom_config_base}/munin.config" }
-  phoenix      { includeConfig "${params.custom_config_base}/phoenix.config" }
-  shh          { includeConfig "${params.custom_config_base}/shh.config" }
-  uct_hex      { includeConfig "${params.custom_config_base}/uct_hex.config" }
-  uppmax_devel { includeConfig "${params.custom_config_base}/uppmax.config"
-                 includeConfig "${params.custom_config_base}/uppmax-devel.config"
+  binac        { includeConfig "${params.custom_config_base}/conf/binac.config" }
+  ccga         { includeConfig "${params.custom_config_base}/conf/ccga.config" }
+  cfc          { includeConfig "${params.custom_config_base}/conf/cfc.config" }
+  crick        { includeConfig "${params.custom_config_base}/conf/crick.config" }
+  gis          { includeConfig "${params.custom_config_base}/conf/gis.config" }
+  hebbe        { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
+  mendel       { includeConfig "${params.custom_config_base}/conf/mendel.config" }
+  munin        { includeConfig "${params.custom_config_base}/conf/munin.config" }
+  phoenix      { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
+  shh          { includeConfig "${params.custom_config_base}/conf/shh.config" }
+  uct_hex      { includeConfig "${params.custom_config_base}/conf/uct_hex.config" }
+  uppmax_devel { includeConfig "${params.custom_config_base}/conf/uppmax.config"
+                 includeConfig "${params.custom_config_base}/conf/uppmax-devel.config"
   }
-  uppmax       { includeConfig "${params.custom_config_base}/uppmax.config" }
-  uzh          { includeConfig "${params.custom_config_base}/uzh.config" }
+  uppmax       { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
+  uzh          { includeConfig "${params.custom_config_base}/conf/uzh.config" }
 }