mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-22 10:38:16 +00:00
commit
540add8238
5 changed files with 24 additions and 0 deletions
1
.github/workflows/main.yml
vendored
1
.github/workflows/main.yml
vendored
|
@ -88,6 +88,7 @@ jobs:
|
||||||
- "sanger"
|
- "sanger"
|
||||||
- "sbc_sharc"
|
- "sbc_sharc"
|
||||||
- "seg_globe"
|
- "seg_globe"
|
||||||
|
- "tigem"
|
||||||
- "uct_hpc"
|
- "uct_hpc"
|
||||||
- "unibe_ibu"
|
- "unibe_ibu"
|
||||||
- "uppmax"
|
- "uppmax"
|
||||||
|
|
|
@ -142,6 +142,7 @@ Currently documentation is available for the following systems:
|
||||||
- [SANGER](docs/sanger.md)
|
- [SANGER](docs/sanger.md)
|
||||||
- [SBC_SHARC](docs/sbc_sharc.md)
|
- [SBC_SHARC](docs/sbc_sharc.md)
|
||||||
- [SEG_GLOBE](docs/seg_globe.md)
|
- [SEG_GLOBE](docs/seg_globe.md)
|
||||||
|
- [TIGEM](docs/tigem.md)
|
||||||
- [UCT_HPC](docs/uct_hpc.md)
|
- [UCT_HPC](docs/uct_hpc.md)
|
||||||
- [UNIBE_IBU](docs/unibe_ibu.md)
|
- [UNIBE_IBU](docs/unibe_ibu.md)
|
||||||
- [UPPMAX](docs/uppmax.md)
|
- [UPPMAX](docs/uppmax.md)
|
||||||
|
|
14
conf/tigem.config
Normal file
14
conf/tigem.config
Normal file
|
@ -0,0 +1,14 @@
|
||||||
|
params {
|
||||||
|
config_profile_description = 'Telethon Institute of Genetic and Medicine (TIGEM) provided by nf-core/configs.'
|
||||||
|
config_profile_contact = 'Giuseppe Martone (@giusmar)'
|
||||||
|
config_profile_url = 'https://github.com/giusmar'
|
||||||
|
}
|
||||||
|
|
||||||
|
process.executor = 'slurm'
|
||||||
|
google.zone = 'europe-west1'
|
||||||
|
|
||||||
|
singularity {
|
||||||
|
enabled = true
|
||||||
|
autoMounts = true
|
||||||
|
cacheDir = 'work/singularity'
|
||||||
|
}
|
7
docs/tigem.md
Normal file
7
docs/tigem.md
Normal file
|
@ -0,0 +1,7 @@
|
||||||
|
# nf-core/configs: TIGEM configuration
|
||||||
|
|
||||||
|
To use, run the pipeline with `-profile tigem`. This will download and launch the tigem.config which has been pre-configured with a setup suitable for the TIGEM personal biocluster.
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
This configuration profile can be used on TIGEM clusters, with the pre-installed SLURM job scheduling system. An additional parameter is `google.zone` to allow downloading data from GCP for a specific time zone. It should not interfere with any local or other AWS configuration.
|
|
@ -70,6 +70,7 @@ profiles {
|
||||||
sanger { includeConfig "${params.custom_config_base}/conf/sanger.config"}
|
sanger { includeConfig "${params.custom_config_base}/conf/sanger.config"}
|
||||||
sbc_sharc { includeConfig "${params.custom_config_base}/conf/sbc_sharc.config"}
|
sbc_sharc { includeConfig "${params.custom_config_base}/conf/sbc_sharc.config"}
|
||||||
seg_globe { includeConfig "${params.custom_config_base}/conf/seg_globe.config"}
|
seg_globe { includeConfig "${params.custom_config_base}/conf/seg_globe.config"}
|
||||||
|
tigem { includeConfig "${params.custom_config_base}/conf/tigem.config"}
|
||||||
uct_hpc { includeConfig "${params.custom_config_base}/conf/uct_hpc.config" }
|
uct_hpc { includeConfig "${params.custom_config_base}/conf/uct_hpc.config" }
|
||||||
unibe_ibu { includeConfig "${params.custom_config_base}/conf/unibe_ibu.config" }
|
unibe_ibu { includeConfig "${params.custom_config_base}/conf/unibe_ibu.config" }
|
||||||
uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
|
uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
|
||||||
|
|
Loading…
Reference in a new issue