millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Remove default non-profile bwa parameters from eager profile

Browse source 
I realised today this is dangerous as these would not necessarily be reported if a user doesn't understand the profiles. Therefore removing these so nf-core/eager defaults are always used unless a specific profile (which would be described in the command itself) is explicitly named.
This commit is contained in:
James A. Fellows Yates 2020-07-07 13:29:13 +02:00 committed by GitHub
parent 530da4d8c0
commit 5517d2cbe0
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
conf/pipeline/eager/shh.config
View file

@ -5,11 +5,7 @@ params {
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs'
igenomes_base = "/projects1/public_data/igenomes/"
// default BWA
bwaalnn = 0.04
bwaalnl = 32
}
}
// Specific nf-core/eager process configuration
process {