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Remove default non-profile bwa parameters from eager profile

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I realised today this is dangerous as these would not necessarily be reported if a user doesn't understand the profiles. Therefore removing these so nf-core/eager defaults are always used unless a specific profile (which would be described in the command itself) is explicitly named.
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James A. Fellows Yates 2020-07-07 13:29:13 +02:00 committed by GitHub
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commit 5517d2cbe0
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6
conf/pipeline/eager/shh.config
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@ -5,11 +5,7 @@ params {
config_profile_contact = 'James Fellows Yates (@jfy133)' config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs' config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs'
igenomes_base = "/projects1/public_data/igenomes/" igenomes_base = "/projects1/public_data/igenomes/"
}
// default BWA
bwaalnn = 0.04
bwaalnl = 32
}
// Specific nf-core/eager process configuration // Specific nf-core/eager process configuration
process { process {