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Merge pull request #144 from MaxUlysse/UPPMAX

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[UPPMAX] add s.* pattern for bianca cluster
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Phil Ewels 2020-03-30 17:01:38 +02:00 committed by GitHub
commit 554ab6673c
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2 changed files with 2 additions and 2 deletions
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2
conf/pipeline/sarek/uppmax.config
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@ -9,7 +9,7 @@ params {
igenomeIgnore = true igenomeIgnore = true
genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle' genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'
} }
if (hostname ==~ "r.*") { if (hostname ==~ "r.*") {
params.singleCPUmem = 6400.MB params.singleCPUmem = 6400.MB
} }
if (hostname ==~ "i.*") { if (hostname ==~ "i.*") {

2
conf/uppmax.config
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@ -26,7 +26,7 @@ params {
def hostname = "hostname".execute().text.trim() def hostname = "hostname".execute().text.trim()
if (hostname ==~ "b.*") { if (hostname ==~ "b.*" || hostname ==~ "s.*") {
params.max_memory = 109.GB params.max_memory = 109.GB
} }