From 50c461034577663dc09457970d078a8c7ca9f352 Mon Sep 17 00:00:00 2001
From: Praveen Raj S <43108054+praveenraj2018@users.noreply.github.com>
Date: Tue, 15 Mar 2022 16:29:19 +0100
Subject: [PATCH 1/4] Adjusted time and maxforks for Mutect2

---
 conf/munin.config | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/conf/munin.config b/conf/munin.config
index 6b854fb..d1f5e53 100644
--- a/conf/munin.config
+++ b/conf/munin.config
@@ -20,6 +20,13 @@ process {
   maxForks = 46
 }
 
+process {
+  withName:Mutect2 {
+    time = { check_max( 48.h * task.attempt, 'time' ) }
+    maxForks = 23
+  }
+}
+
 singularity {
   cacheDir   = '/data1/containers/'
   enabled    = true

From 13c66f7e98448d855a3d90f9fe28b4e57b253640 Mon Sep 17 00:00:00 2001
From: Praveen Raj S <43108054+praveenraj2018@users.noreply.github.com>
Date: Tue, 15 Mar 2022 16:56:03 +0100
Subject: [PATCH 2/4] Update conf/munin.config

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
---
 conf/munin.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/munin.config b/conf/munin.config
index d1f5e53..1ea4b7f 100644
--- a/conf/munin.config
+++ b/conf/munin.config
@@ -21,7 +21,7 @@ process {
 }
 
 process {
-  withName:Mutect2 {
+  withName:'Mutect2|Mutect2Single' {
     time = { check_max( 48.h * task.attempt, 'time' ) }
     maxForks = 23
   }

From cb96c4bd2ddf5fc0108e5eab507186383fcf37d1 Mon Sep 17 00:00:00 2001
From: Praveen Raj S <43108054+praveenraj2018@users.noreply.github.com>
Date: Tue, 15 Mar 2022 16:56:11 +0100
Subject: [PATCH 3/4] Update conf/munin.config

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
---
 conf/munin.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/munin.config b/conf/munin.config
index 1ea4b7f..9aa4bfa 100644
--- a/conf/munin.config
+++ b/conf/munin.config
@@ -22,7 +22,7 @@ process {
 
 process {
   withName:'Mutect2|Mutect2Single' {
-    time = { check_max( 48.h * task.attempt, 'time' ) }
+    time = {48.h * task.attempt}
     maxForks = 23
   }
 }

From a844335942480738ae38a508a6e720b9f51134de Mon Sep 17 00:00:00 2001
From: Praveen Raj S <43108054+praveenraj2018@users.noreply.github.com>
Date: Tue, 15 Mar 2022 16:59:06 +0100
Subject: [PATCH 4/4] Update conf/munin.config

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
---
 conf/munin.config | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/conf/munin.config b/conf/munin.config
index 9aa4bfa..4f9c209 100644
--- a/conf/munin.config
+++ b/conf/munin.config
@@ -18,9 +18,8 @@ params {
 process {
   executor = 'local'
   maxForks = 46
-}
 
-process {
+// Limit cpus for Mutect2
   withName:'Mutect2|Mutect2Single' {
     time = {48.h * task.attempt}
     maxForks = 23