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Merge pull request #153 from FriederikeHanssen/cfc_scratch

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Add scratch = true to avoid writing of intermediate file to /tmp
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Harshil Patel 2020-05-22 15:48:00 +01:00 committed by GitHub
commit 5981e5ec27
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conf/cfc.config
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@ -14,6 +14,7 @@ process {
beforeScript = 'module load devel/singularity/3.4.2' beforeScript = 'module load devel/singularity/3.4.2'
executor = 'slurm' executor = 'slurm'
queue = { task.memory > 60.GB || task.cpus > 20 ? 'qbic' : 'compute' } queue = { task.memory > 60.GB || task.cpus > 20 ? 'qbic' : 'compute' }
scratch = 'true'
} }
weblog{ weblog{

1
conf/cfc_dev.config
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@ -13,6 +13,7 @@ process {
beforeScript = 'module load devel/singularity/3.4.2' beforeScript = 'module load devel/singularity/3.4.2'
executor = 'slurm' executor = 'slurm'
queue = { task.memory > 60.GB || task.cpus > 20 ? 'qbic' : 'compute' } queue = { task.memory > 60.GB || task.cpus > 20 ? 'qbic' : 'compute' }
scratch = 'true'
} }
weblog{ weblog{