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update config for MENDEL cluster

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This commit is contained in:
phue 2019-02-27 16:03:26 +00:00
parent 164ae59568
commit 59887d9bc8
1 changed files with 7 additions and 5 deletions
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12
conf/mendel.config
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@ -2,21 +2,23 @@
params { params {
config_profile_name = 'MENDEL' config_profile_name = 'MENDEL'
config_profile_description = 'GMI MENDEL cluster profile provided by nf-core/configs' config_profile_description = 'GMI MENDEL cluster profile provided by nf-core/configs'
config_profile_contact = 'Philipp H (@phue)' config_profile_contact = 'Patrick Hüther (@phue)'
config_profile_url = 'http://www.gmi.oeaw.ac.at/' config_profile_url = 'http://www.gmi.oeaw.ac.at/'
} }
singularity { manifest {
enabled = true nextflowVersion = '>=19.01.0'
} }
process { process {
beforeScript = 'module load Singularity' beforeScript = {'module load Singularity; module load Miniconda3'}
executor = 'pbs' executor = 'pbspro'
clusterOptions = { "-P $params.project" } clusterOptions = { "-P $params.project" }
} }
params { params {
max_cpus = 32
max_memory = 128.GB
max_time = 192.h max_time = 192.h
igenomesIgnore = true igenomesIgnore = true
} }