From 59a0901b684624b955071dd82da65e66382dc49b Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Sun, 5 Sep 2021 12:07:53 +0200
Subject: [PATCH] Add library merge steps to have overhead

---
 conf/pipeline/eager/eva.config | 28 ++++++++++++++++++++++++++--
 1 file changed, 26 insertions(+), 2 deletions(-)

diff --git a/conf/pipeline/eager/eva.config b/conf/pipeline/eager/eva.config
index 95ce832..765e01a 100644
--- a/conf/pipeline/eager/eva.config
+++ b/conf/pipeline/eager/eva.config
@@ -84,6 +84,14 @@ process {
     clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
    }
 
+  withName: seqtype_merge {
+    clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
+   }
+   
+   withName: additional_library_merge {
+    clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
+   }
+
   withName: malt {
     clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
     cpus = { check_max( 32, 'cpus' ) }
@@ -222,7 +230,15 @@ profiles {
         
         withName: library_merge {
           clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
-        }
+         }
+
+        withName: seqtype_merge {
+          clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
+         }
+
+         withName: additional_library_merge {
+          clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
+         }
 
         withName: malt {
           clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
@@ -367,7 +383,15 @@ profiles {
         
         withName: library_merge {
           clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
-        }
+         }
+
+        withName: seqtype_merge {
+          clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
+         }
+
+         withName: additional_library_merge {
+          clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
+         }
 
         withName:hostremoval_input_fastq {
           cpus = { check_max( 1, 'cpus' ) }