From 5bc6ed90bde50cf0443e9cfadc626546b6731cff Mon Sep 17 00:00:00 2001
From: sofstam <sofia.stamouli@scilifelab.se>
Date: Wed, 11 May 2022 11:13:31 +0200
Subject: [PATCH] Add hasta config for taxprofiler

---
 conf/pipeline/taxprofiler/hasta.config | 10 ++++++++++
 pipeline/taxprofiler.config            | 13 +++++++++++++
 2 files changed, 23 insertions(+)
 create mode 100644 conf/pipeline/taxprofiler/hasta.config
 create mode 100644 pipeline/taxprofiler.config

diff --git a/conf/pipeline/taxprofiler/hasta.config b/conf/pipeline/taxprofiler/hasta.config
new file mode 100644
index 0000000..fcf7b7d
--- /dev/null
+++ b/conf/pipeline/taxprofiler/hasta.config
@@ -0,0 +1,10 @@
+process {
+
+    withName:'BBMAP_BBDUK' {
+        memory = { check_max( 80.GB   * task.attempt, 'memory' ) }
+    }
+
+    withName: 'MALT_RUN' {
+        memory = { check_max( 80.GB   * task.attempt, 'memory' ) }
+    }
+}
diff --git a/pipeline/taxprofiler.config b/pipeline/taxprofiler.config
new file mode 100644
index 0000000..be9f02b
--- /dev/null
+++ b/pipeline/taxprofiler.config
@@ -0,0 +1,13 @@
+/*
+ * -------------------------------------------------
+ *  nfcore/taxprofiler custom profile Nextflow config file
+ * -------------------------------------------------
+ * Config options for custom environments.
+ * Cluster-specific config options should be saved
+ * in the conf/pipeline/taxprofiler folder and imported
+ * under a profile name here.
+ */
+
+profiles {
+  hasta { includeConfig "${params.custom_config_base}/conf/pipeline/taxprofiler/hasta.config" }
+}