1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-21 16:16:04 +00:00
This commit is contained in:
ameynert 2021-07-23 10:18:02 +01:00 committed by GitHub
parent 3bfaf65450
commit 5c56e13747
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23

View file

@ -41,7 +41,7 @@ Load Singularity from the module system.
module load singularity module load singularity
``` ```
The eddie profile is set to use `/exports/igmm/eddie/BioinformaticsResources/nf-core/singularity-images` as the Singularity cache directory. If some containers for your pipeline run are not present, please contact the [IGC Data Manager](data.manager@igc.ed.ac.uk) to have them added. You can add these lines to the file `$HOME/.bashrc`, or you can run these commands before you run an nf-core pipeline. The eddie profile is set to use `/exports/igmm/eddie/BioinformaticsResources/nfcore/singularity-images` as the Singularity cache directory. If some containers for your pipeline run are not present, please contact the [IGC Data Manager](data.manager@igc.ed.ac.uk) to have them added. You can add these lines to the file `$HOME/.bashrc`, or you can run these commands before you run an nf-core pipeline.
If you do not have access to `/exports/igmm/eddie/BioinformaticsResources`, set the Singularity cache directory to somewhere sensible that is not in your `$HOME` area (which has limited space). It will take time to download all the Singularity containers, but you can use this again. If you do not have access to `/exports/igmm/eddie/BioinformaticsResources`, set the Singularity cache directory to somewhere sensible that is not in your `$HOME` area (which has limited space). It will take time to download all the Singularity containers, but you can use this again.