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add config for MENDEL cluster

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phue 2018-12-04 16:58:33 +01:00
parent daa41d2dbf
commit 5c609859c5
2 changed files with 21 additions and 0 deletions
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20
conf/mendel.config Normal file
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@ -0,0 +1,20 @@
/*
* --------------------------------------------------------------------------------------
* Nextflow config file for the MENDEL cluster at the Gregor Mendel Institute in Vienna
* -------------------------------------------------------------------------------------
*/
singularity {
enabled = true
}
process {
beforeScript = 'module load Singularity'
executor = 'pbs'
clusterOptions = { "-P $params.project" }
}
params {
max_time = 192.h
igenomesIgnore = true
}

1
nfcore_custom.config
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@ -17,6 +17,7 @@ profiles {
crick { includeConfig "${config_base}/crick.config" } crick { includeConfig "${config_base}/crick.config" }
gis { includeConfig "${config_base}/gis.config" } gis { includeConfig "${config_base}/gis.config" }
hebbe { includeConfig "${config_base}/hebbe.config" } hebbe { includeConfig "${config_base}/hebbe.config" }
mendel { includeConfig "${config_base}/mendel.config" }
phoenix { includeConfig "${config_base}/pheonix.config" } phoenix { includeConfig "${config_base}/pheonix.config" }
uct_hex { includeConfig "${config_base}/uct_hex.config" } uct_hex { includeConfig "${config_base}/uct_hex.config" }
uppmax_devel { includeConfig "${config_base}/uppmax.config" uppmax_devel { includeConfig "${config_base}/uppmax.config"