diff --git a/docs/sbc_sharc.md b/docs/sbc_sharc.md index 7b055d1..7d5bcd3 100644 --- a/docs/sbc_sharc.md +++ b/docs/sbc_sharc.md @@ -2,17 +2,17 @@ The following nf-core pipelines have been successfully configured for use on the the [University of Sheffield ShARC cluster](https://docs.hpc.shef.ac.uk/en/latest/index.html): -- [atacseq](https://nf-co.re/atacseq) -- [chipseq](https://nf-co.re/chipseq) -- [rnaseq](https://nf-co.re/rnaseq) -- [sarek](https://nf-co.re/sarek) +- [nf-co.re/atacseq](https://nf-co.re/atacseq) +- [nf-co.re/chipseq](https://nf-co.re/chipseq) +- [nf-co.re/rnaseq](https://nf-co.re/rnaseq) +- [nf-co.re/sarek](https://nf-co.re/sarek) When using [`sbc_sharc.config`](../conf/sbc_sharc.config) with the pipelines listed above, the appropriate configuration file from the list below will be loaded automatically: -- atacseq: [sbc_sharc atacseq config](../conf/pipeline/atacseq/sbc_sharc.config) -- chipseq: [sbc_sharc chipseq config](../conf/pipeline/chipseq/sbc_sharc.config) -- rnaseq: [sbc_sharc rnaseq config](../conf/pipeline/rnaseq/sbc_sharc.config) -- sarek: [sbc_sharc sarek config](../conf/pipeline/sarek/sbc_sharc.config) +- [atacseq sbc_sharc.config](../conf/pipeline/atacseq/sbc_sharc.config) +- [chipseq sbc_sharc.config](../conf/pipeline/chipseq/sbc_sharc.config) +- [rnaseq sbc_sharc.config](../conf/pipeline/rnaseq/sbc_sharc.config) +- [sarek sbc_sharc.config](../conf/pipeline/sarek/sbc_sharc.config) The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file might work with other nf-core pipelines as it stands but we cannot guarantee they will run without issue. We will be continuing to create, test and optimise configurations for new pipelines in the future.