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Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max

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James A. Fellows Yates 2019-12-21 20:55:54 +01:00 committed by GitHub
parent 5632a0631a
commit 638758423a
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1 changed files with 3 additions and 2 deletions
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5
conf/pipeline/eager/shh.config
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@ -10,8 +10,9 @@ params {
// Specific nf-core/eager process configuration
process {
withName: malt {
memory = { 725.GB * task.attempt }
cpus = { 64 * task.attempt }
maxRetries = 1
memory = { task.attempt > 1 ? 1900.GB : 725.GB }
cpus = { task.attempt > 1 ? 112 : 64 }
time = 1440.h
queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
}