From 648025c1ceea79460eb1f064d72d49d25f3ee942 Mon Sep 17 00:00:00 2001 From: Gwenna Breton Date: Mon, 8 Aug 2022 16:04:21 +0200 Subject: [PATCH] Clarified where to store singularity images --- docs/medair.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/medair.md b/docs/medair.md index 7b0c7d7..48ad557 100644 --- a/docs/medair.md +++ b/docs/medair.md @@ -24,9 +24,9 @@ source activate nf-core ### Storage of Singularity images -When downloading a nf-core pipeline for the first time (or a specific version of a pipeline), you can choose to store the Singularity image for future use. A central location for these images is: `/apps/bio/dependencies/nf-core/singularities`. +When downloading a nf-core pipeline for the first time (or a specific version of a pipeline), you can choose to store the Singularity image for future use. We chose to have a central location for these images on medair: `/apps/bio/dependencies/nf-core/singularities`. -If you run or add the following to your `.bashrc`, Nexflow will know where to store the images: +For Nexflow to know where to store new images, run or add the following to your `.bashrc`: ```bash export NXF_SINGULARITY_CACHEDIR="/apps/bio/dependencies/nf-core/singularities"