diff --git a/conf/ku_sund_dangpu.config b/conf/ku_sund_dangpu.config new file mode 100644 index 0000000..3f3ab5d --- /dev/null +++ b/conf/ku_sund_dangpu.config @@ -0,0 +1,36 @@ +# change ${abc123} to your KU ID before using this config + +params { + config_profile_contact = ‘Adrija Kalvisa ’ + config_profile_description = ‘dangpufl01 configuration’ + config_profile_url = ‘’ + + // General cpus/memory/time requirements + max_cpus = 30 + max_memory = 200.GB + max_time = 72.h +} + +process { + # should we change to a newer java env? + beforeScript = ‘module load jdk/1.8.0_291 singularity/3.8.0’ + executor = ‘slurm’ + + # uncomment specifically for running mnaseseq pipeline: + # withName: TrimGalore { + # cpus = 1 + # } + +} + +executor { + queueSize = 10 +} + +singularity { + enabled = true + autoMounts = true + # set up the cache directory outside the $HOME directory + cacheDir = ‘/projects/dan1/people/${abc123}/cache/singularity-images’ + runOptions = ‘--bind /projects:/projects’ +} \ No newline at end of file