From 65d7080921eb37bd7544df601dc4cb3206102131 Mon Sep 17 00:00:00 2001
From: qlr900 <qlr900@dangpu01fl.unicph.domain>
Date: Tue, 5 Jul 2022 11:17:49 +0200
Subject: [PATCH] add conf/ku_sund_dangpu.config

---
 conf/ku_sund_dangpu.config | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)
 create mode 100644 conf/ku_sund_dangpu.config

diff --git a/conf/ku_sund_dangpu.config b/conf/ku_sund_dangpu.config
new file mode 100644
index 0000000..3f3ab5d
--- /dev/null
+++ b/conf/ku_sund_dangpu.config
@@ -0,0 +1,36 @@
+# change ${abc123} to your KU ID before using this config
+
+params {
+  config_profile_contact = ‘Adrija Kalvisa <adrija.kalvisa@sund.ku.dk>’
+  config_profile_description = ‘dangpufl01 configuration’
+  config_profile_url = ‘’
+  
+  // General cpus/memory/time requirements
+  max_cpus = 30
+  max_memory = 200.GB
+  max_time = 72.h
+}
+
+process {
+  # should we change to a newer java env?
+  beforeScript = ‘module load jdk/1.8.0_291 singularity/3.8.0’
+  executor = ‘slurm’
+  
+  # uncomment specifically for running mnaseseq pipeline:
+  # withName: TrimGalore {
+  #  cpus = 1
+  #  }
+  
+}
+
+executor {
+  queueSize = 10
+}
+
+singularity {
+  enabled = true
+  autoMounts = true
+  # set up the cache directory outside the $HOME directory
+  cacheDir = ‘/projects/dan1/people/${abc123}/cache/singularity-images’
+  runOptions = ‘--bind /projects:/projects’
+}
\ No newline at end of file