millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-26 01:39:55 +00:00
Code Issues Releases Packages Activity

Merge pull request #82 from arontommi/dev

Browse source 
documentation on how to fix bianca "Requested node configuration is not available" problem
This commit is contained in:
Phil Ewels 2019-11-08 15:07:07 +01:00 committed by GitHub
commit 6790dbd4a3
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 6 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
docs/uppmax.md
View file

@ -26,6 +26,12 @@ If running on Bianca, you will have no internet connection and these configs wil
Please use the nf-core helper tool on a different system to download the required pipeline files, and transfer them to bianca. Please use the nf-core helper tool on a different system to download the required pipeline files, and transfer them to bianca.
This helper tool bundles the config files in this repo together with the pipeline files, so the profile will still be available. This helper tool bundles the config files in this repo together with the pipeline files, so the profile will still be available.
Note that Bianca only allocates 7 GB memory per core so the max memory needs to be limited:
```bash
--max_memory "112GB"
```
## Getting more memory ## Getting more memory
If your nf-core pipeline run is running out of memory, you can run on a fat node with more memory using the following nextflow flags: If your nf-core pipeline run is running out of memory, you can run on a fat node with more memory using the following nextflow flags: