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Merge pull request #82 from arontommi/dev

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documentation on how to fix bianca "Requested node configuration is not available" problem
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Phil Ewels 2019-11-08 15:07:07 +01:00 committed by GitHub
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@ -26,6 +26,12 @@ If running on Bianca, you will have no internet connection and these configs wil
Please use the nf-core helper tool on a different system to download the required pipeline files, and transfer them to bianca. Please use the nf-core helper tool on a different system to download the required pipeline files, and transfer them to bianca.
This helper tool bundles the config files in this repo together with the pipeline files, so the profile will still be available. This helper tool bundles the config files in this repo together with the pipeline files, so the profile will still be available.
Note that Bianca only allocates 7 GB memory per core so the max memory needs to be limited:
```bash
--max_memory "112GB"
```
## Getting more memory ## Getting more memory
If your nf-core pipeline run is running out of memory, you can run on a fat node with more memory using the following nextflow flags: If your nf-core pipeline run is running out of memory, you can run on a fat node with more memory using the following nextflow flags: