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Merge pull request #175 from drpatelh/master
Remove loading of specific Singularity version
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commit
69a660da3b
2 changed files with 1 additions and 2 deletions
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@ -11,7 +11,6 @@ singularity {
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}
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process {
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beforeScript = 'module load Singularity/2.6.0-foss-2016b'
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executor = 'slurm'
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}
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@ -10,7 +10,7 @@ Before running the pipeline you will need to load Nextflow and Singularity using
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## Load Nextflow and Singularity environment modules
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module purge
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module load Nextflow/19.10.0
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module load Singularity/2.6.0-foss-2016b
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module load Singularity
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```
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A local copy of the [AWS-iGenomes](https://github.com/ewels/AWS-iGenomes) resource has been made available on CAMP so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline. You can do this by simply using the `--genome <GENOME_ID>` parameter. Some of the more exotic genomes may not have been downloaded onto CAMP so have a look in the `igenomes_base` path specified in [`crick.config`](../conf/crick.config), and if your genome of interest isnt present please contact [BABS](mailto:bioinformatics@crick.ac.uk).
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