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basic Cedars-Sinai HPC config file

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Alex Rajewski 2022-04-22 10:17:13 -07:00 committed by GitHub
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conf/cedars.config Normal file
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//Profile config names for nf-core/configs
params {
config_profile_description = 'Cedars-Sinai Medical Center HPC Profile'
config_profile_contact = 'Alex Rajewski (@rajewski)'
config_profile_url = 'https://www.cedars-sinai.edu/research/cores/informatics-computing/resources.html'
max_memory = 90.GB
max_cpus = 10
max_time = 240.h
}
// Specify the queing system
executor {
name = "sge"
}
process {
penv = 'smp'
beforeScript =
"""
module load 'singularity/3.6.0'
"""
}
singularity {
enabled = true
}