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basic Cedars-Sinai HPC config file
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conf/cedars.config
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26
conf/cedars.config
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Cedars-Sinai Medical Center HPC Profile'
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config_profile_contact = 'Alex Rajewski (@rajewski)'
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config_profile_url = 'https://www.cedars-sinai.edu/research/cores/informatics-computing/resources.html'
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max_memory = 90.GB
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max_cpus = 10
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max_time = 240.h
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}
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// Specify the queing system
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executor {
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name = "sge"
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}
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process {
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penv = 'smp'
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beforeScript =
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"""
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module load 'singularity/3.6.0'
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"""
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}
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singularity {
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enabled = true
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}
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