From 6b9cdc8ef3c959cf7a4c2137a1b6bf80ee970a07 Mon Sep 17 00:00:00 2001
From: Gwenna Breton <Gwenna.breton@gu.se>
Date: Thu, 7 Jul 2022 14:24:15 +0200
Subject: [PATCH] Added info about Sentieon singularities

---
 docs/medair.md | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/docs/medair.md b/docs/medair.md
index 5eb1c46..7b0c7d7 100644
--- a/docs/medair.md
+++ b/docs/medair.md
@@ -64,3 +64,7 @@ For example, the following job would run with the `wgs` profile:
 ```bash
 run nextflow nf-core/raredisease -profile medair,wgs
 ```
+
+### Sentieon
+
+In some pipelines (sarek, raredisease) it is possible to use Sentieon for alignment and variant calling. If ones uses the label `sentieon` for running a process, the config file contains the path to the Sentieon singularity image on Medair.