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Hotfix for breaking pipelines that don't already support params.custom_config_base

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This commit is contained in:
Phil Ewels 2019-03-06 17:03:13 +01:00
parent a2f5522396
commit 6daf76f47d
1 changed files with 17 additions and 17 deletions
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34
nfcore_custom.config
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@ -8,24 +8,24 @@
* name here.
*/
default_uri = "https://raw.githubusercontent.com/nf-core/configs/master/conf"
config_base = "${params.custom_config_base ?: default_uri}"
params.custom_config_version = 'master'
params.custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
profiles {
binac { includeConfig "${config_base}/binac.config" }
ccga { includeConfig "${config_base}/ccga.config" }
cfc { includeConfig "${config_base}/cfc.config" }
crick { includeConfig "${config_base}/crick.config" }
gis { includeConfig "${config_base}/gis.config" }
hebbe { includeConfig "${config_base}/hebbe.config" }
mendel { includeConfig "${config_base}/mendel.config" }
munin { includeConfig "${config_base}/munin.config" }
phoenix { includeConfig "${config_base}/phoenix.config" }
shh { includeConfig "${config_base}/shh.config" }
uct_hex { includeConfig "${config_base}/uct_hex.config" }
uppmax_devel { includeConfig "${config_base}/uppmax.config"
includeConfig "${config_base}/uppmax-devel.config"
binac { includeConfig "${params.custom_config_base}/binac.config" }
ccga { includeConfig "${params.custom_config_base}/ccga.config" }
cfc { includeConfig "${params.custom_config_base}/cfc.config" }
crick { includeConfig "${params.custom_config_base}/crick.config" }
gis { includeConfig "${params.custom_config_base}/gis.config" }
hebbe { includeConfig "${params.custom_config_base}/hebbe.config" }
mendel { includeConfig "${params.custom_config_base}/mendel.config" }
munin { includeConfig "${params.custom_config_base}/munin.config" }
phoenix { includeConfig "${params.custom_config_base}/phoenix.config" }
shh { includeConfig "${params.custom_config_base}/shh.config" }
uct_hex { includeConfig "${params.custom_config_base}/uct_hex.config" }
uppmax_devel { includeConfig "${params.custom_config_base}/uppmax.config"
includeConfig "${params.custom_config_base}/uppmax-devel.config"
}
uppmax { includeConfig "${config_base}/uppmax.config" }
uzh { includeConfig "${config_base}/uzh.config" }
uppmax { includeConfig "${params.custom_config_base}/uppmax.config" }
uzh { includeConfig "${params.custom_config_base}/uzh.config" }
}