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Added singularity module
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1 changed files with 16 additions and 3 deletions
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@ -5,7 +5,13 @@ params {
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config_profile_url = 'https://www.ed.ac.uk/information-services/research-support/research-computing/ecdf/high-performance-computing'
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}
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conda.createTimeout = '2h'
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conda {
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createTimeout = '2h'
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}
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singularity {
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enabled = true
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}
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process {
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executor = 'sge'
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@ -19,12 +25,19 @@ process {
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maxErrors = '-1'
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maxRetries = 3
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# load module script for Anaconda
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# load module script for Anaconda and Singularity
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beforeScript = { '. /etc/profile.d/modules.sh; sleep 2; ' }
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module = 'anaconda/5.3.1'
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module = 'singularity/3.5.3'
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}
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params {
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saveReference = true
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// illumina iGenomes reference file paths on GIS Aquila
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// iGenomes reference base
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igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes/'
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max_memory = 384.GB
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max_cpus = 32
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max_time = 240.h
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}
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